species:   Cocin
pid:       PID1267
parent:    cci-milR-14
paralog:   
locus:     scaffold_104:30952-31038
matures:   ['UGGAGAUGGUAGCAACCGGA', 'CUCUUGCUGCUUCUUCGCC']
srr:       SRR9972091
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972091.cram scaffold_104:30952-31038

2 out of bounds
6 alignments
6 proper strand
6 stranded perfect matches

*********************                                             *********************
UUGGAGAUGGUAGCAACCGGAGUAGUUGGCGUGAAGCUGCUGGCGGAGCGGCUGCGCGCUUCUUCCUCCUCUUGCUGCUUCUUCGCC
.((((((.((((((((..((((.((..((((((.(((((((.....))))))).)))))).))..))))..))))))))))))))..
-UGGAGAUGGUAGCAACCGGA------------------------------------------------------------------ l=20 a=2 c
--------------------------------------------------------------------CUCUUGCUGCUUCUUCGCC l=19 a=0 c*
-UGGAGAUGGUAGCAACCGGA------------------------------------------------------------------ l=20 a=2 ma
--------------------------------------------------------------------CUCUUGCUGCUUCUUCGCC l=19 a=0 ma*

UUGGAGAUGGUAGCAACCGGAGU---------------------------------------------------------------- l=23 a=1 
-UGGAGAUGGUAGCAACCGG------------------------------------------------------------------- l=19 a=1 
-UGGAGAUGGUAGCAACCGGA------------------------------------------------------------------ l=20 a=2 (c,ma)
-UGGAGAUGGUAGCAACCGGAGU---------------------------------------------------------------- l=22 a=2 

mb-01011
ax-1011011
ku-01
ss-111111111100
fn-011
